PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000560.1_g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Nin-like
Protein Properties Length: 1558aa    MW: 174491 Da    PI: 9.2796
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000560.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK27.65.6e-09821082349
                   RWP-RK  23 keLgvclTvLKriCRqyGIkRWPhRki 49 
                               + +v+  + K++CR+ GI  WP+Rk+
  Itr_sc000560.1_g00013.1  82 INANVGRATFKKKCREVGIVYWPYRKL 108
                              3668**********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS515199.93242132IPR003035RWP-RK domain
PfamPF142239.1E-14302432No hitNo description
PfamPF139769.1E-9657705IPR025724GAG-pre-integrase domain
PROSITE profilePS5099418.181710902IPR001584Integrase, catalytic core
SuperFamilySSF530981.74E-30720896IPR012337Ribonuclease H-like domain
PfamPF006654.7E-11720852IPR001584Integrase, catalytic core
Gene3DG3DSA:3.30.420.108.3E-21720895IPR012337Ribonuclease H-like domain
SuperFamilySSF566721.22E-3610741297No hitNo description
PfamPF077279.9E-9110751317IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamilySSF566721.22E-3613231508No hitNo description
CDDcd092728.83E-7314011540No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 1558 aa     Download sequence    Send to blast
MANTTHSSSQ DNSSFWDEIH LSPLRDSAPS TDHSSVENFE NAPPELNEIV DTAVTDVVAA  60
DQSNTVVVEE DYTITAVDVA NINANVGRAT FKKKCREVGI VYWPYRKLEF GEIKDQAELQ  120
RVIKGLEDEK KAILQNPNIE LAEATTRLRD KCDRNSSKKR RYIDPTTIPS TIPESSSQAP  180
IFPDIPELAP EDIQEVRNPS RTPSSFRVTM TTNSADGALV PSRQPPSPAT PFLATAHQAL  240
SIKLFTHNYI YWRTQVLPFL RSQGLIGYVD GSIPCPPATI STVATQPSAP PITSPNPAYL  300
PWIQQDQAIL SLLVSSLTSE VMYLAVGKDN SKEVWDSINA ALASTSRSRC LSLLGQFQTL  360
RQANLTPGEY LGQAQMLVES LSLAGRPLTA NEQLLYVLRG LRPEFRAMAS SLTTPGTPVK  420
LAQLADHLRA QEFIQSDEFA ALETVPANNP QTAFFAGRGR NTGGGRSNNR GGRNGRGRGN  480
SRGRNGGAPR CQICQLTGHS AVSCYKRYDD RPTAHANVAF SGDPNGHTSA DAWYPNTGAS  540
AHATPDAQMM DHSEPYSGND VLKIGNGTGL GVSSVGRTVI RFDSHNFHMS NILHVPKLSI  600
PLLSVYRFTN ENNVFFEFHK NLFYVKDCTT RAILLKGSTI GGLYQLILPR GHNAFLSARA  660
SSVVWHQRLG YPHSQLLQRV LQTCPVTTNN INSIKMCSAC QLGKSSRFPL DRVPGSSHNV  720
LDLVYTDIWG PSPVISNTGS RYFVLFVDDC TRFTWFYPLR VKSDIYKTFN SFRAMVERQF  780
SXXXXXXXXX XXXXXXXVER QFSRSIKAIQ SDLGGEYRHL HTLFQSLGIL HRQSCAYTHE  840
QNGRVERKNR HIVETGLALL AESKTPLKYW EYAFETATYL INCLPSTALN FLSPYSKLFN  900
TQPPYTFFRV FGCRCYPYLW PYNRHKIEYR STPCIFLGYP VGYRGYRCLD LHTGKIYTCR  960
HVRFSENVFP FALQERMQDN TVPGSPDTTW AIAPVLTTSQ PPVISVPVKS ASPTVSILVP  1020
TESSGTQVDT QALTSSTDTR TTTDRAQDGG HVMRTRRKTR GTDAMDQEFN ALLHNHTWKL  1080
VPATPRMNII GCKWVFRTKR KADGTVERYK ARLVAKGFNQ VAREDFFDTF SPVVKPTTVR  1140
LLFSLAVSNS WTLRQLDVHN AFLNGHLPET VYMKQPPGYE DPLHPDHVCH LQRSLYGLKQ  1200
APRAWFKRLH DFLTTVGFSP SKTDVSLFHY TAGESRVFLL VYVDDIIMLG NDPKLIDSLL  1260
RQMSSVFTIR DLRAPGFFLG IETIPCKEGL LLSQKRYMKD ILLRAGMADC KPLATPAPVS  1320
QSQASSSELF DNPTQYRRII GALQYLTITR PDLSYSVNRL CQFMHSPTTE HWGLLKRVCR  1380
YIKGTQDLGL RLTKSKHFAL HAYSDSDWAG CPVDRKSTSG YAVYLGDNLI SWVSRKQRTV  1440
ARSSTEAEYK GLADVAAEVT WVVSLLRQLR LHSGQPTTLW CDNLGATYLA ANPVFHARTK  1500
HVEVDYHFIR DKVASGDLVV NFVSTKDQLT DIFTKPLPAQ RFQALRSKLN VTTYQSCA
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.17e-11RWP-RK domain-containing protein